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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
small RNA-seq
Assay category
110
Transcription
107
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
50
broad histone mark
34
narrow histone mark
12
control
11
transcription factor
9
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
21
July, 2019
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
147
bigWig
126
bed narrowPeak
118
bam
112
tsv
77
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
264
Homo sapiens
Biosample type
252
tissue
11
primary cell
1
in vitro differentiated cells
Organ
942
pancreas
788
liver
681
connective tissue
519
epithelium
488
adipose tissue
371
heart
348
kidney
254
brain
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
87
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
264
AMP
Genome assembly (visualization)
146
GRCh38
103
hg19
Lab
224
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
GRO-seq
small RNA-seq
month_released!
May, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
18
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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