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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
total RNA-seq
38
ATAC-seq
5
pCHi-C
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
39
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
2
December, 2019
1
August, 2018
Available data
162
bam
130
bed narrowPeak
126
bigWig
122
fastq
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
4
tsv
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
248
Homo sapiens
Biosample type
1526
tissue
809
primary cell
523
cell line
248
in vitro differentiated cells
9
stem cell
Organ
86
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
248
AMP
Genome assembly (visualization)
164
hg19
136
GRCh38
Lab
199
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
GRO-seq
total RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
ATAC-seq
pCHi-C
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
6
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
hepatocyte
15
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