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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
6
3D chromatin structure
5
DNA methylation
2
Transcription
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
54
bigWig
51
bed narrowPeak
45
bed broadPeak
41
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
txt
Organism
77
Homo sapiens
Biosample type
77
tissue
13
primary cell
Organ
298
heart
249
kidney
248
brain
222
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
58
hg19
39
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
GRO-seq
total RNA-seq
organ_slims!
ureter
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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