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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
total RNA-seq
53
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
107
DNA accessibility
68
DNA methylation
55
Transcription
8
3D chromatin structure
Target of assay
3
control
Date released
406
November, 2017
322
August, 2017
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
61
bigWig
56
bam
45
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
21
tsv
18
fastq
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
txt
Organism
238
Homo sapiens
Biosample type
152
primary cell
86
tissue
Organ
102
pancreas
88
epithelium
26
liver
15
heart
14
brain
10
musculature of body
7
vasculature
6
blood vessel
6
kidney
5
connective tissue
5
limb
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
134
HPAP
104
AMP
Genome assembly (visualization)
86
hg19
35
GRCh38
Lab
134
Klaus Kaestner, Upenn
66
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
GRO-seq
total RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
238 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 16 more…
tissue
liver
20
1
islet of Langerhans
18
1
heart left ventricle
2
4
1
gastrocnemius medialis
4
right lobe of liver
1
2
+ See 24 more…
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