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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
total RNA-seq
46
ATAC-seq
37
DNase-seq
6
Hi-C
5
RRBS
3
single cell RNA-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
84
DNA accessibility
73
DNA binding
6
3D chromatin structure
6
DNA methylation
5
Transcription
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
15
control
5
transcription factor
1
RNA binding protein
Date released
45
June, 2019
35
February, 2023
26
August, 2017
26
October, 2019
14
February, 2021
12
May, 2019
9
July, 2019
3
March, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
134
bed narrowPeak
101
bam
95
bigWig
72
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tagAlign
5
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
175
Homo sapiens
Biosample type
148
tissue
14
cell line
13
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
embryo
22
vein
20
lung
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
123
GRCh38
108
hg19
Lab
175
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
GRO-seq
total RNA-seq
organ_slims!
ureter
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
small RNA-seq
WGBS
pCHi-C
snATAC-seq
tissue
coronary artery
5
36
2
skeletal muscle tissue
22
1
4
1
1
1
tibial artery
23
1
2
muscle of leg
7
13
1
muscle of arm
17
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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