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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
121
tissue
Organ
884
pancreas
787
liver
667
connective tissue
488
adipose tissue
466
epithelium
350
kidney
349
heart
283
brain
199
vasculature
194
blood vessel
151
bone element
121
limb
106
artery
92
musculature of body
69
blood
69
bodily fluid
43
nerve
36
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
GRO-seq
whole genome sequencing assay
files.file_type!
bed bedMethyl
month_released!
February, 2023
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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