Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
301
ChIP-seq
168
single cell RNA-seq
132
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
15
Hi-C
11
RRBS
10
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
DNA binding
300
Transcription
135
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
168
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
159
August, 2021
126
August, 2017
93
February, 2021
76
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
22
February, 2020
19
April, 2020
16
April, 2019
15
July, 2019
12
December, 2017
12
May, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
187
bam
157
txt
149
tsv
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
887
Homo sapiens
Biosample type
890
tissue
537
primary cell
196
cell line
125
in vitro differentiated cells
6
stem cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
795
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1685
hg19
Lab
656
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
GRO-seq
assembly!
GRCh38
organ_slims!
vasculature
BIOSAMPLE
ASSAY
890 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
+ See 76 more…
See all biosamples
Download