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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
5
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
DNA binding
65
Transcription
15
DNA methylation
7
DNA accessibility
4
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
5
transcription factor
3
RNA binding protein
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
141
bigWig
136
bam
72
bed narrowPeak
66
bigBed narrowPeak
65
tsv
15
bed bedMethyl
15
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
156
Homo sapiens
Biosample type
125
tissue
31
primary cell
Organ
64
heart
29
kidney
18
connective tissue
17
brain
13
epithelium
12
adipose tissue
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
musculature of body
3
artery
2
pericardium
1
eye
Project
156
AMP
Genome assembly (visualization)
156
hg19
143
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
29
2
1
2
kidney
18
1
1
heart right ventricle
11
heart
7
2
1
omental fat pad
4
1
+ See 21 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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