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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
18
small RNA-seq
15
RRBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
DNase-seq
Assay category
69
Transcription
15
DNA methylation
9
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
81
bigWig
78
bam
69
tsv
15
bed bedMethyl
15
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
97
Homo sapiens
Biosample type
60
tissue
37
primary cell
Organ
24
connective tissue
17
brain
17
heart
13
epithelium
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
9
liver
6
pancreas
5
musculature of body
3
artery
2
pericardium
1
eye
Project
97
AMP
Genome assembly (visualization)
97
hg19
85
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
heart left ventricle
2
1
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
right lobe of liver
2
2
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primary cell
osteoblast
4
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
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