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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
total RNA-seq
GRO-seq
Assay category
15
DNA binding
12
Transcription
Target of assay
8
histone
8
histone modification
5
narrow histone mark
4
control
3
broad histone mark
3
transcription factor
Date released
13
February, 2018
8
August, 2021
6
December, 2017
Available data
30
bam
24
bigWig
22
fastq
12
bed narrowPeak
12
tsv
bed bed3+
Organism
27
Homo sapiens
Biosample type
19
in vitro differentiated cells
8
cell line
Organ
836
pancreas
777
liver
641
connective tissue
484
adipose tissue
413
epithelium
358
heart
254
kidney
248
brain
223
vasculature
219
blood vessel
137
artery
86
limb
75
bone element
69
blood
69
bodily fluid
57
eye
54
musculature of body
41
nerve
27
embryo
24
spleen
20
lung
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
27
AMP
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
27
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
GRO-seq
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
15
4
cell line
H1-hESC
8
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