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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
18
ATAC-seq
16
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
161
DNA binding
18
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
139
histone
139
histone modification
76
broad histone mark
63
narrow histone mark
13
transcription factor
9
control
5
RNA binding protein
Date released
406
November, 2017
279
October, 2019
265
August, 2017
205
May, 2021
200
May, 2022
192
August, 2021
191
June, 2019
183
February, 2023
148
May, 2020
117
May, 2019
90
December, 2017
87
November, 2018
80
April, 2019
72
February, 2021
59
September, 2020
51
October, 2018
47
September, 2018
47
September, 2023
41
July, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
14
May, 2023
13
March, 2020
11
September, 2017
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
January, 2018
1
August, 2022
1
December, 2019
Available data
230
bigWig
204
bam
129
bed narrowPeak
tsv
87
tagAlign
2
bed bed3+
Organism
205
Homo sapiens
Biosample type
153
primary cell
50
in vitro differentiated cells
2
tissue
Organ
4
pancreas
3
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
105
AMP
100
T1D
Genome assembly (visualization)
139
hg19
99
GRCh38
Lab
183
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
GRO-seq
audit.ERROR.category!
inconsistent ontology term
files.file_type!
tsv
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
pancreatic PP cell
3
tissue
pancreas
1
thymus
1
See all biosamples
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