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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
79
tissue
6
primary cell
Organ
864
pancreas
789
liver
663
connective tissue
488
adipose tissue
epithelium
384
heart
331
kidney
272
brain
232
vasculature
227
blood vessel
139
artery
118
limb
85
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
42
nerve
30
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
Project
85
AMP
Genome assembly (visualization)
65
hg19
45
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
GRO-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
85 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
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