Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
total RNA-seq
141
ChIP-seq
81
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
single cell RNA-seq
4
WGBS
2
Capture-C
2
FAIRE-seq
2
Hi-C
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
324
Transcription
141
DNA binding
102
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
87
histone
87
histone modification
47
broad histone mark
40
control
40
narrow histone mark
19
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
140
August, 2017
120
July, 2018
61
May, 2021
53
November, 2019
51
October, 2018
26
February, 2021
24
May, 2022
18
February, 2023
18
October, 2019
13
March, 2020
10
November, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
October, 2017
4
August, 2021
4
June, 2019
4
March, 2019
2
May, 2019
1
August, 2022
1
February, 2020
Available data
488
bam
425
bigWig
309
tsv
206
fastq
140
bed narrowPeak
63
bigBed narrowPeak
29
bed bed3+
15
bed broadPeak
12
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
hic
1
bedpe
1
hdf5
Organism
588
Homo sapiens
Biosample type
495
tissue
primary cell
90
cell line
3
in vitro differentiated cells
Organ
775
liver
644
connective tissue
588
pancreas
488
adipose tissue
377
heart
317
kidney
265
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
116
epithelium
80
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
36
embryo
25
spleen
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
554
AMP
34
T1D
Genome assembly (visualization)
463
hg19
437
GRCh38
Lab
520
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
75
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
GRO-seq
biosample_type!
primary cell
files.file_type!
hic
BIOSAMPLE
ASSAY
588 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
WGBS
Capture-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
4
1
6
1
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
9
4
2
2
1
1
1
endocrine pancreas
16
cell line
EndoC_BH1
33
15
19
6
2
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
Download