Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
26
ChIP-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
74
DNA accessibility
26
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
82
histone
histone modification
50
broad histone mark
32
narrow histone mark
14
transcription factor
12
control
8
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
27
June, 2019
20
July, 2019
15
April, 2019
May, 2019
7
March, 2020
5
May, 2024
3
February, 2020
3
May, 2021
3
October, 2019
Available data
164
tsv
132
bam
117
bigWig
88
bed narrowPeak
32
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
277
Homo sapiens
Biosample type
210
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
677
liver
575
connective tissue
506
pancreas
457
adipose tissue
298
kidney
277
heart
158
bone element
131
blood vessel
131
vasculature
116
artery
91
epithelium
78
brain
72
limb
60
blood
60
bodily fluid
56
musculature of body
54
eye
24
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
Genome assembly (visualization)
160
GRCh38
116
hg19
Lab
272
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
assay_title!
GRO-seq
biosample_type!
primary cell
month_released!
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
2
3
11
4
1
1
1
coronary artery
1
36
2
heart
1
4
18
2
1
1
1
heart right ventricle
17
1
1
2
2
1
1
left cardiac atrium
18
1
5
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download