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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
Assay category
177
Transcription
87
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
314
Homo sapiens
Biosample type
314
primary cell
Organ
142
epithelium
142
pancreas
Project
314
HPAP
Genome assembly (visualization)
3
hg19
Lab
1042
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
115
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
30
audit script error
assay_title!
GRO-seq
biosample_type!
stem cell
files.file_type!
bigWig
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
314 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
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