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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
6
July, 2019
6
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
81
Homo sapiens
Biosample type
71
tissue
10
primary cell
Organ
508
liver
476
pancreas
338
epithelium
318
kidney
231
brain
205
heart
165
connective tissue
146
vasculature
141
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
55
eye
27
nerve
20
vein
19
lung
18
ureter
16
spleen
15
embryo
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
81
AMP
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
GRO-seq
files.file_type!
bed bed3
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
4
1
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
1
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