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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
84
DNA binding
12
Transcription
5
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
65
histone
65
histone modification
43
broad histone mark
22
narrow histone mark
17
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
41
October, 2019
8
July, 2019
6
August, 2021
4
March, 2020
2
February, 2020
1
November, 2017
Available data
104
bam
86
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
13
tsv
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
107
Homo sapiens
Biosample type
86
tissue
21
primary cell
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
36
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
77
hg19
71
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
GRO-seq
files.file_type!
bed broadPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
1
1
aorta
13
4
1
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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