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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
6
DNA binding
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
10
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
Available data
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
22
Homo sapiens
Biosample type
21
tissue
1
primary cell
Organ
270
pancreas
211
kidney
195
epithelium
149
heart
101
bone element
79
connective tissue
74
liver
61
vasculature
60
blood vessel
54
eye
47
artery
42
adipose tissue
39
brain
22
musculature of body
20
lung
16
skeleton
14
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
6
hg19
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
GRO-seq
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
6
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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