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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
12
ATAC-seq
9
WGBS
8
ChIP-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
14
DNA accessibility
9
DNA methylation
8
DNA binding
Target of assay
6
histone
6
histone modification
5
broad histone mark
5
control
1
narrow histone mark
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
82
July, 2019
79
April, 2019
78
November, 2018
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
27
December, 2018
24
May, 2022
23
January, 2019
16
March, 2020
14
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
98
bigWig
96
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
18
bed narrowPeak
16
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
96
Homo sapiens
Biosample type
78
tissue
18
primary cell
Organ
22
brain
21
heart
17
connective tissue
13
adipose tissue
9
blood vessel
9
vasculature
8
pancreas
7
kidney
7
liver
5
epithelium
5
musculature of body
3
artery
1
limb
1
pericardium
spleen
Project
96
AMP
Genome assembly (visualization)
91
GRCh38
83
hg19
Lab
96
AMP-T2D consortium
Audit category:
3
missing controlled_by
assay_title!
GRO-seq
organ_slims!
spleen
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
small RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
2
2
4
brain
8
heart left ventricle
2
2
2
omental fat pad
4
1
1
subcutaneous adipose tissue
4
1
+ See 22 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
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