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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
27
DNA binding
6
Transcription
3
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
70
Homo sapiens
Biosample type
59
tissue
11
primary cell
Organ
737
pancreas
694
liver
597
connective tissue
446
adipose tissue
375
epithelium
225
brain
224
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
70
musculature of body
61
blood
61
bodily fluid
58
bone element
36
embryo
31
nerve
24
spleen
18
ureter
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
70
AMP
Genome assembly (visualization)
69
hg19
53
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
GRO-seq
files.file_type!
hic
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
skeletal muscle tissue
13
1
2
1
1
muscle of arm
17
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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