Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
154
DNA binding
80
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
106
histone
106
histone modification
64
broad histone mark
42
narrow histone mark
33
control
15
transcription factor
5
RNA binding protein
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
309
August, 2021
279
October, 2019
198
June, 2019
150
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
3
January, 2018
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
194
bed narrowPeak
160
bam
135
bigWig
123
tsv
93
bigBed narrowPeak
64
xls
57
txt
20
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
423
Homo sapiens
Biosample type
344
tissue
42
cell line
38
in vitro differentiated cells
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
35
liver
28
brain
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
1
adipose tissue
1
connective tissue
Project
424
AMP
Genome assembly (visualization)
194
GRCh38
146
hg19
Lab
260
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
GRO-seq
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
epithelium
BIOSAMPLE
ASSAY
424 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 20 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
See all biosamples
Download