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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
18
DNase-seq
14
total RNA-seq
GRO-seq
1
pCHi-C
Assay category
22
DNA binding
18
DNA accessibility
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
18
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
March, 2020
Available data
54
bam
46
bigWig
32
bed narrowPeak
26
fastq
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
15
tsv
Organism
55
Homo sapiens
Biosample type
28
in vitro differentiated cells
19
tissue
8
cell line
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
47
GRCh38
47
hg19
Lab
55
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
GRO-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
bladder (urinary bladder)
1
cell line
H1-hESC
8
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