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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
single cell RNA-seq
77
ATAC-seq
70
ChIP-seq
48
WGBS
26
total RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
110
Transcription
109
DNA accessibility
70
DNA binding
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
160
bam
156
fastq
149
bigWig
134
zippedFastqFolder
111
bed narrowPeak
73
bigBed narrowPeak
49
tsv
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
337
Homo sapiens
Biosample type
178
primary cell
98
tissue
61
cell line
Organ
150
pancreas
113
epithelium
93
liver
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
2
musculature of body
1
adipose tissue
Project
203
AMP
134
HPAP
Genome assembly (visualization)
159
hg19
128
GRCh38
Lab
139
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
GRO-seq
month_released!
October, 2017
BIOSAMPLE
ASSAY
337 results
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Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
3
22
25
pancreatic beta cell
3
13
16
pancreatic acinar cell
6
4
pancreatic delta cell
7
+ See 6 more…
tissue
liver
20
4
20
2
islet of Langerhans
6
18
6
spleen
6
2
1
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
45
1
GM12878
15
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