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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
101
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
205
DNA accessibility
101
DNA binding
66
Transcription
34
DNA methylation
8
3D chromatin structure
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
17
control
16
recombinant protein
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
387
bam
375
bigWig
290
bed narrowPeak
285
bigBed narrowPeak
200
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
88
fastq
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
4
hdf5
1
csv
Organism
414
Homo sapiens
Biosample type
266
tissue
87
primary cell
61
cell line
Organ
92
kidney
65
liver
60
heart
53
musculature of body
50
brain
37
connective tissue
37
limb
33
epithelium
19
vasculature
18
ureter
17
pancreas
16
blood vessel
15
blood
15
bodily fluid
14
adipose tissue
9
spleen
8
eye
5
artery
2
pericardium
Project
414
AMP
Genome assembly (visualization)
368
GRCh38
349
hg19
Lab
414
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
414 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
brain
14
1
kidney
13
1
1
muscle of leg
13
1
+ See 51 more…
primary cell
skeletal muscle satellite cell
8
1
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
3
1
1
cardiac muscle cell
1
3
1
+ See 29 more…
cell line
HepG2
45
1
GM12878
15
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