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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
70
total RNA-seq
63
ChIP-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
209
DNA accessibility
92
Transcription
63
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
January, 2018
3
June, 2018
1
August, 2022
Available data
372
bam
367
bigWig
263
bed narrowPeak
226
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
91
tsv
73
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
1
csv
Organism
399
Homo sapiens
Biosample type
240
tissue
159
primary cell
Organ
94
epithelium
92
kidney
82
pancreas
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
8
eye
5
artery
2
pericardium
Project
399
AMP
Genome assembly (visualization)
361
GRCh38
350
hg19
Lab
399
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
399 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 50 more…
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 34 more…
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