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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
103
ATAC-seq
50
ChIP-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
103
DNA accessibility
50
DNA binding
40
Transcription
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
279
October, 2019
242
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
110
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
56
July, 2019
49
April, 2018
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
40
May, 2024
39
March, 2020
39
November, 2019
34
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
95
bam
75
bigWig
50
tagAlign
27
bed narrowPeak
25
fastq
19
zippedFastqFolder
1
tsv
Organism
194
Homo sapiens
Biosample type
143
primary cell
50
tissue
1
cell line
Organ
51
liver
3
epithelium
3
pancreas
Project
151
AMP
43
HPAP
Genome assembly (visualization)
72
hg19
22
GRCh38
Lab
151
AMP-T2D consortium
43
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
assay_title!
Hi-C
HiChIP
total RNA-seq
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
40
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
+ See 26 more…
tissue
liver
50
cell line
HepG2
1
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