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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
10
ChIP-seq
8
ATAC-seq
4
DNase-seq
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
13
DNA accessibility
10
DNA binding
Target of assay
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
5
October, 2019
2
July, 2019
2
June, 2019
2
November, 2017
Available data
77
bam
65
bigWig
54
tsv
18
bed narrowPeak
6
bigBed narrowPeak
6
tagAlign
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3+
2
fastq
1
tar
Organism
77
Homo sapiens
Biosample type
tissue
66
cell line
11
primary cell
Organ
408
epithelium
394
liver
358
pancreas
91
connective tissue
82
vasculature
78
heart
77
blood vessel
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
15
brain
6
musculature of body
5
vein
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
77
AMP
Genome assembly (visualization)
72
hg19
71
GRCh38
Lab
77
AMP-T2D consortium
assay_title!
Hi-C
MPRA
biosample_type!
tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
2
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
smooth muscle cell of the coronary artery
1
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