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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
52
single cell RNA-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
406
DNA binding
114
Transcription
27
DNA methylation
8
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
74
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
311
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
523
bam
464
bigWig
368
fastq
320
bed narrowPeak
314
bigBed narrowPeak
114
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
3
tar
Organism
555
Homo sapiens
Biosample type
315
cell line
161
tissue
79
primary cell
Organ
324
liver
106
brain
50
epithelium
45
pancreas
25
heart
19
connective tissue
16
vasculature
12
adipose tissue
12
blood vessel
11
kidney
6
musculature of body
3
artery
2
pericardium
1
eye
1
limb
Project
555
AMP
Genome assembly (visualization)
417
hg19
408
GRCh38
Lab
555
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
Hi-C
STARR-seq
BIOSAMPLE
ASSAY
555 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 30 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 28 more…
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