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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
215
ATAC-seq
174
single cell RNA-seq
133
total RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
Hi-C
11
RRBS
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
307
Transcription
244
DNA accessibility
237
DNA binding
11
DNA methylation
Target of assay
163
control
75
histone
75
histone modification
45
narrow histone mark
30
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
226
August, 2021
101
February, 2021
94
February, 2023
80
October, 2019
63
August, 2017
47
September, 2023
46
May, 2022
25
November, 2017
23
February, 2020
23
May, 2020
22
May, 2019
21
March, 2020
19
April, 2020
19
November, 2019
15
April, 2019
14
May, 2023
12
December, 2017
11
October, 2018
9
October, 2017
8
January, 2021
6
July, 2019
6
September, 2017
4
December, 2018
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1394
bam
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
327
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
914
Homo sapiens
Biosample type
916
tissue
407
primary cell
131
cell line
91
in vitro differentiated cells
6
stem cell
Organ
207
kidney
151
heart
128
pancreas
100
bone element
91
liver
63
brain
connective tissue
61
adipose tissue
61
blood vessel
61
vasculature
53
eye
46
artery
27
limb
20
lung
19
musculature of body
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
821
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
145
GRCh38
94
hg19
Lab
628
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
Hi-C
WGBS
files.file_type!
bigWig
organ_slims!
blood
connective tissue
BIOSAMPLE
ASSAY
916 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
islet of Langerhans
41
65
32
7
4
1
4
liver
63
1
20
1
1
bone element
84
coronary artery
2
35
1
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