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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
14
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
32
DNA accessibility
14
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
27
February, 2023
21
October, 2019
7
June, 2019
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
51
tissue
5
primary cell
Organ
605
liver
475
pancreas
329
kidney
319
epithelium
257
brain
200
heart
193
connective tissue
147
vasculature
141
blood vessel
104
limb
84
adipose tissue
80
musculature of body
69
artery
69
blood
69
bodily fluid
56
eye
38
nerve
23
embryo
22
spleen
20
vein
19
lung
18
ureter
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
56
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
56
AMP-T2D consortium
assay_title!
Hi-C
WGBS
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
primary cell
retinal pigment epithelial cell
3
1
1
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