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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
18
snATAC-seq
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
29
DNA accessibility
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
51
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
Organism
139
Homo sapiens
Biosample type
104
primary cell
28
tissue
7
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
2
epithelium
Project
2837
AMP
321
HPAP
139
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
135
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
Hi-C
pCHi-C
organ_slims!
adipose tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
cell line
EndoC_BH1
2
3
2
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