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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
4
ATAC-seq
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
4
July, 2019
2
November, 2018
1
February, 2023
Available data
243
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
242
tissue
15
primary cell
Organ
613
liver
499
pancreas
340
epithelium
329
kidney
257
brain
222
heart
204
connective tissue
163
vasculature
157
blood vessel
111
limb
100
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
257
AMP
Genome assembly (visualization)
205
GRCh38
149
hg19
Lab
257
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
Hi-C
siRNA RNA-seq
files.file_type!
tsv
month_released!
May, 2021
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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