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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
total RNA-seq
46
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
74
DNA binding
56
DNA accessibility
6
Transcription
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
36
May, 2019
36
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
5
June, 2019
4
July, 2019
2
November, 2017
1
March, 2020
Available data
105
bed narrowPeak
97
bam
66
bigWig
55
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
7
tsv
6
tagAlign
2
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
139
Homo sapiens
Biosample type
107
tissue
18
primary cell
14
cell line
Organ
538
liver
467
pancreas
336
epithelium
278
heart
278
kidney
176
connective tissue
149
brain
144
vasculature
139
blood vessel
97
bone element
96
limb
81
adipose tissue
79
artery
71
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
20
lung
18
ureter
15
embryo
14
vein
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
105
GRCh38
72
hg19
Lab
139
AMP-T2D consortium
assay_title!
Hi-C
total RNA-seq
files.file_type!
ibed
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
3
36
2
tibial artery
19
1
2
aorta
9
4
2
1
ascending aorta
12
1
thoracic aorta
12
1
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primary cell
endothelial cell of umbilical vein
11
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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