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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
173
single cell RNA-seq
102
total RNA-seq
87
RNA microarray
53
ATAC-seq
24
pCHi-C
17
snATAC-seq
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
275
Transcription
75
DNA accessibility
22
DNA methylation
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
163
August, 2021
126
August, 2017
93
February, 2021
80
October, 2019
May, 2022
47
September, 2023
42
February, 2023
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
22
March, 2020
19
April, 2020
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
1
August, 2022
1
January, 2019
1
May, 2021
Available data
180
bam
159
tsv
150
txt
122
tagAlign
73
fastq
63
bed narrowPeak
40
bigWig
22
bed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
Organism
804
Homo sapiens
Biosample type
807
tissue
385
primary cell
190
cell line
125
in vitro differentiated cells
7
stem cell
Organ
133
kidney
119
heart
92
bone element
82
liver
67
connective tissue
66
adipose tissue
63
pancreas
62
brain
53
eye
32
musculature of body
27
blood vessel
27
vasculature
22
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
741
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1703
hg19
Lab
667
AMP-T2D consortium
66
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assay_title!
Hi-C
assembly!
GRCh38
award.project!
T1D
month_released!
May, 2022
BIOSAMPLE
ASSAY
807 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
snATAC-seq
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
46
19
17
4
1
1
1
4
bone element
84
liver
70
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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