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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
4
DNA accessibility
2
Transcription
Date released
4
February, 2023
2
August, 2021
2
February, 2021
2
May, 2021
Available data
309
fastq
229
bam
175
bigWig
153
zippedFastqFolder
84
bed narrowPeak
41
tsv
38
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bedgraph
5
bed bed3
4
tar
4
txt
3
bedpe bed3+
2
csv
2
ibed
1
vcf
0
tagAlign bed3+
Organism
10
Homo sapiens
Biosample type
6
in vitro differentiated cells
3
primary cell
1
cell line
tissue
Organ
7
connective tissue
1
liver
Project
10
AMP
Genome assembly (visualization)
56
hg19
GRCh38
Lab
6
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
Hi-C
assembly!
GRCh38
biosample_type!
tissue
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
Capture-C
pCHi-C
total RNA-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
osteoblast
1
cell line
HepG2
1
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