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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Hi-C
6
single cell RNA-seq
5
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
41
DNA binding
11
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
34
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
25
October, 2019
13
May, 2019
6
August, 2021
5
February, 2020
2
February, 2021
2
July, 2019
2
November, 2017
1
March, 2020
Available data
42
bam
12
tsv
6
bigWig
2
bed broadPeak
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
2
fastq
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
56
Homo sapiens
Biosample type
43
tissue
11
primary cell
2
cell line
Organ
303
pancreas
256
liver
222
epithelium
148
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
40
vasculature
38
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
GRCh38
235
hg19
Lab
56
AMP-T2D consortium
assay_title!
Hi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
tibial nerve
11
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 5 more…
primary cell
endothelial cell of umbilical vein
7
1
choroid plexus epithelial cell
1
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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