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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
42
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
42
DNA binding
18
DNA accessibility
Target of assay
78
histone
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
83
May, 2021
24
August, 2017
22
February, 2021
17
August, 2021
15
December, 2017
15
February, 2018
5
November, 2019
4
October, 2019
2
March, 2020
Available data
187
bam
165
bigWig
127
tsv
54
fastq
50
bed narrowPeak
11
bed bed3+
4
tagAlign
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
187
Homo sapiens
Biosample type
1365
tissue
343
cell line
337
primary cell
187
in vitro differentiated cells
1
stem cell
Organ
29
connective tissue
10
embryo
5
epithelium
2
liver
1
heart
1
pancreas
Project
187
AMP
Genome assembly (visualization)
216
hg19
187
GRCh38
4
hg18
Lab
187
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
Hi-C
target.investigated_as!
histone modification
recombinant protein
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
23
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
10
induced pluripotent stem cell
9
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