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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
31
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
281
Transcription
207
DNA binding
190
DNA accessibility
11
DNA methylation
Target of assay
177
histone
177
histone modification
94
broad histone mark
83
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
40
September, 2020
33
October, 2019
27
July, 2019
16
August, 2017
15
February, 2021
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
November, 2018
1
September, 2018
Available data
415
bigWig
413
bam
225
bed narrowPeak
162
tsv
122
fastq
99
tagAlign
85
bigBed narrowPeak
73
zippedFastqFolder
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
706
Homo sapiens
Biosample type
2252
tissue
706
primary cell
568
cell line
385
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
357
AMP
204
T1D
145
HPAP
Genome assembly (visualization)
435
hg19
341
GRCh38
Lab
322
AMP-T2D consortium
239
Kyle Gaulton, UCSD
145
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
audit script error
Audit category:
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
Hi-C
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
706 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
21
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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