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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
total RNA-seq
Assay category
10
DNA binding
2
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
4
control
4
histone
4
histone modification
4
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
4
December, 2017
4
June, 2019
3
May, 2019
1
July, 2018
1
July, 2019
1
May, 2021
1
October, 2019
Available data
14
bam
9
bigWig
8
bed narrowPeak
5
bigBed narrowPeak
5
fastq
2
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
15
Homo sapiens
Biosample type
cell line
10
primary cell
5
in vitro differentiated cells
Organ
84
bone element
19
connective tissue
15
epithelium
9
musculature of body
8
kidney
6
embryo
6
heart
5
pancreas
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
15
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
assay_title!
Hi-C
biosample_type!
cell line
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
total RNA-seq
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
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