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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
142
total RNA-seq
95
ChIP-seq
48
snATAC-seq
47
WGBS
25
DNase-seq
9
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
331
Transcription
273
DNA accessibility
95
DNA binding
57
DNA methylation
Target of assay
62
histone
62
histone modification
34
narrow histone mark
28
broad histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
41
September, 2018
24
July, 2019
20
May, 2021
13
October, 2019
7
August, 2020
6
November, 2020
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
359
fastq
348
bam
318
bigWig
167
tsv
153
zippedFastqFolder
128
bed narrowPeak
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
25
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
Organism
757
Homo sapiens
Biosample type
2548
tissue
757
primary cell
574
cell line
335
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
299
pancreas
37
connective tissue
36
kidney
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
8
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
436
AMP
321
HPAP
Genome assembly (visualization)
328
hg19
284
GRCh38
Lab
436
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
48
inconsistent ontology term
27
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Hi-C
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
month_released!
December, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
757 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
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