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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
473
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
473
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
323
transcription factor
108
control
91
histone modification
90
histone
81
recombinant protein
54
narrow histone mark
RNA binding protein
36
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
265
November, 2017
194
May, 2020
59
December, 2017
53
August, 2017
40
May, 2022
33
August, 2021
30
November, 2018
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
603
bam
544
bigWig
386
fastq
366
bed narrowPeak
284
bigBed narrowPeak
174
tsv
75
tagAlign
48
bed broadPeak
48
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
tar
1
bed bed3
1
csv
1
vcf
Organism
708
Homo sapiens
Biosample type
357
tissue
325
cell line
13
in vitro differentiated cells
13
primary cell
Organ
919
pancreas
708
liver
667
connective tissue
503
epithelium
486
adipose tissue
379
heart
350
kidney
280
brain
226
vasculature
221
blood vessel
159
bone element
140
artery
118
limb
90
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
34
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
708
AMP
Genome assembly (visualization)
546
hg19
462
GRCh38
Lab
639
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
5
inconsistent control run_type
assay_title!
Hi-C
audit.WARNING.category!
inconsistent control read length
organ_slims!
stomach
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
708 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
143
167
20
2
3
1
1
1
1
right lobe of liver
9
3
1
2
1
2
cell line
HepG2
304
14
1
1
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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