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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
166
ATAC-seq
117
total RNA-seq
58
single cell RNA-seq
41
WGBS
29
snATAC-seq
24
DNase-seq
15
pCHi-C
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
220
DNA accessibility
176
Transcription
173
DNA binding
50
DNA methylation
Target of assay
156
histone
156
histone modification
85
broad histone mark
71
narrow histone mark
16
control
4
RNA binding protein
4
transcription factor
Date released
205
May, 2021
147
May, 2020
134
May, 2022
38
June, 2019
33
October, 2019
20
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
4
April, 2018
4
August, 2021
1
August, 2017
Available data
577
bigWig
572
bam
fastq
277
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
26
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
tar
Organism
634
Homo sapiens
Biosample type
1880
tissue
634
primary cell
232
cell line
207
in vitro differentiated cells
5
stem cell
Organ
161
epithelium
85
pancreas
36
kidney
connective tissue
27
vasculature
24
blood vessel
20
vein
14
musculature of body
13
heart
13
liver
9
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
279
AMP
203
T1D
152
HPAP
Genome assembly (visualization)
363
hg19
277
GRCh38
Lab
244
AMP-T2D consortium
238
Kyle Gaulton, UCSD
152
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
assay_title!
Hi-C
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
634 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
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