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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
21
ChIP-seq
17
pCHi-C
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
188
Transcription
51
DNA methylation
21
DNA binding
Target of assay
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
134
May, 2022
88
May, 2021
36
June, 2019
27
July, 2019
18
September, 2020
12
February, 2023
12
October, 2019
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
3
February, 2021
2
May, 2019
1
August, 2017
1
August, 2021
Available data
406
bam
379
bigWig
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
505
Homo sapiens
Biosample type
1830
tissue
505
primary cell
210
cell line
202
in vitro differentiated cells
6
stem cell
Organ
132
epithelium
85
pancreas
27
connective tissue
26
kidney
12
vasculature
11
heart
10
liver
9
blood vessel
9
brain
8
blood
8
bodily fluid
6
musculature of body
5
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
233
AMP
152
HPAP
120
T1D
Genome assembly (visualization)
236
hg19
181
GRCh38
Lab
228
AMP-T2D consortium
152
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
assay_title!
Hi-C
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
505 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
ChIP-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
51
21
monocyte
15
54
1
1
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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