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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
DNase-seq
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
21
DNA binding
3
DNA accessibility
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
24
October, 2019
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
1
tsv
Organism
25
Homo sapiens
Biosample type
20
primary cell
5
tissue
Organ
931
pancreas
770
liver
666
connective tissue
505
epithelium
479
adipose tissue
365
heart
342
kidney
268
brain
221
vasculature
216
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
25
AMP-T2D consortium
assay_title!
Hi-C
audit.WARNING.category!
inconsistent control run_type
month_released!
July, 2019
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
islet of Langerhans
4
ovary
1
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