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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
DNase-seq
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
39
DNA binding
14
Transcription
3
DNA accessibility
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
20
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
56
bam
44
bigWig
27
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
57
Homo sapiens
Biosample type
29
in vitro differentiated cells
20
primary cell
8
cell line
Organ
886
pancreas
787
liver
682
connective tissue
516
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
158
bone element
141
artery
118
limb
90
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
44
hg19
41
GRCh38
1
hg18
Lab
57
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
Hi-C
award.project!
LungMap
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
DNase-seq
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
1
cell line
H1-hESC
8
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