Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
125
ChIP-seq
80
single cell RNA-seq
70
total RNA-seq
31
DNase-seq
27
snATAC-seq
10
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
188
DNA accessibility
152
Transcription
125
DNA binding
11
DNA methylation
Target of assay
95
histone
95
histone modification
51
broad histone mark
44
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
55
June, 2019
55
May, 2021
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
33
October, 2019
27
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
November, 2018
1
September, 2018
Available data
237
bigWig
235
bam
151
fastq
143
bed narrowPeak
87
bigBed narrowPeak
66
tsv
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
19
zippedFastqFolder
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
477
Homo sapiens
Biosample type
2217
tissue
563
cell line
477
primary cell
387
in vitro differentiated cells
10
stem cell
Organ
319
epithelium
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
359
AMP
T1D
118
HPAP
Genome assembly (visualization)
257
hg19
163
GRCh38
Lab
324
AMP-T2D consortium
118
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
Hi-C
award.project!
T1D
month_released!
May, 2022
organ_slims!
pancreas
BIOSAMPLE
ASSAY
477 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
snATAC-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
52
27
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
+ See 74 more…
See all biosamples
Download