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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
Hi-C
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
3
February, 2020
1
July, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
118
Homo sapiens
Biosample type
118
tissue
Organ
783
liver
748
pancreas
680
connective tissue
490
adipose tissue
385
heart
361
epithelium
304
kidney
281
brain
229
vasculature
223
blood vessel
158
bone element
141
artery
118
limb
87
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
21
spleen
20
vein
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
118
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
month_released!
March, 2020
target.investigated_as!
other context
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
distal epiphysis of femur
1
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