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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
4
MeRIP-seq
Hi-C
Assay category
177
Transcription
97
DNA accessibility
47
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
4
November, 2020
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
Organism
325
Homo sapiens
Biosample type
321
primary cell
cell line
4
tissue
Organ
153
pancreas
149
epithelium
Project
321
HPAP
4
AMP
Genome assembly (visualization)
10
GRCh38
Lab
3274
AMP-T2D consortium
338
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_title!
Hi-C
biosample_type!
cell line
BIOSAMPLE
ASSAY
325 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
MeRIP-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
islet of Langerhans
4
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