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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
46
ATAC-seq
43
ChIP-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
Hi-C
1
pCHi-C
Assay category
65
Transcription
51
DNA accessibility
43
DNA binding
2
DNA methylation
Target of assay
54
histone
54
histone modification
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
May, 2019
12
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
2
March, 2020
Available data
117
bam
90
bigWig
76
bed narrowPeak
66
tsv
26
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
162
Homo sapiens
Biosample type
96
tissue
66
cell line
primary cell
Organ
733
liver
605
connective tissue
543
pancreas
469
adipose tissue
320
heart
307
kidney
195
brain
162
blood vessel
162
vasculature
158
bone element
125
artery
104
epithelium
84
limb
61
blood
61
bodily fluid
60
musculature of body
56
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
133
GRCh38
97
hg19
Lab
162
AMP-T2D consortium
assay_title!
Hi-C
biosample_type!
primary cell
files.file_type!
cool
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
162 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
1
36
5
2
aorta
1
6
4
2
1
tibial artery
1
1
9
2
thoracic aorta
2
1
9
ascending aorta
2
8
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
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