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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
9
ChIP-seq
8
ATAC-seq
Hi-C
2
DNase-seq
Assay category
54
Transcription
10
DNA accessibility
9
DNA binding
Target of assay
5
transcription factor
3
control
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
66
February, 2021
October, 2019
3
November, 2017
2
July, 2019
2
June, 2019
Available data
73
bam
63
bigWig
54
tsv
16
bed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
3
fastq
2
bed bed3+
Organism
73
Homo sapiens
Biosample type
tissue
66
cell line
7
primary cell
Organ
461
epithelium
424
liver
422
pancreas
133
connective tissue
79
heart
78
vasculature
73
blood vessel
69
blood
69
bodily fluid
68
artery
37
embryo
26
kidney
17
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
73
AMP
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
73
AMP-T2D consortium
assay_title!
Hi-C
biosample_type!
tissue
files.file_type!
bed bedMethyl
month_released!
October, 2019
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
smooth muscle cell of the coronary artery
1
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